Joyce,
My understanding of the Huguenots background is that France was essentially Roman Catholic. In 1598 the French King Henry IV granted tolerance to Protestants there in an edict signed in Nantes (The Edict of Nantes). So most Protestants were comfortable with that. However in 1685, Louis XIV revoked that edict (Revocation of the Edict of Nantes) and this led to widespread persecution of Huguenots and other French Protestants. Many fled France and sought sanctuary in Ireland, England and Scotland (and presumably elsewhere).
So the big influx of Huguenots to Ireland was in the late 1680s and 1690s. I don’t think there would have been a big Huguenot population in Inverness in the 1500s. They didn’t really have any significant reason for going there at that time as far as I can tell. Neither for reasons of persecution nor for economic reasons (ie work).
Huguenots in Ireland did establish their own churches in Dublin and elsewhere but after a period of time most realigned, often to Presbyterianism which being based on Calvin’s doctrines fairly closely aligned with their views. And there were plenty of Presbyterian churches in Ireland, especially in Ulster, because the area had been so heavily settled by Scots earlier in the 1600s. (Presbyterianism was established in Scotland in the mid 1500s, by John Knox).
Something like 200,000 Scots settled in Ireland in the 1600s (representing 20% of the entire Scottish population). There were some who fled to Ireland for religious reasons during the “killing times” in the 1680s but most came for largely economic reasons. The Plantation of Ulster in the period 1610 – 1625 brought the first big wave attracted by offers of cheap land with low rents and lots of work. Other Scots stayed behind in Ireland when a 10,000 strong Scottish army was disbanded in Carrickfergus in the 1640s, and there was a huge wave of new arrivals in the 1690s because of famine in Scotland. So some did come because religious persecution, notably the Covenanters, but that wasn’t the main reason for the Scottish influxes.
If your ancestors fled France because of the revocation of the edict of Nantes, I suspect that must have been in the 1680s or thereabouts. I also suspect they may just have come direct from France, rather than via Inverness.
https://en.wikipedia.org/wiki/Edict_of_Nantes
I can’t find any trace of anyone named MacJunkin, either in Ireland or in Scotland. And if they were of French origins, I can’t see them adopting a Mc prefix in Scotland because that originates in the patronymic naming system, which the French didn’t use.
I had a look at the 1841 Scottish census. (That’s the oldest census in Scotland) The name Junkin is not common in Scotland. There were just 12 (and no MacJunkins). There were about 6 Junkin families in the whole of Scotland. None in Inverness though there was a 3 year old child in Morayshire which is not too far away. So they were thinner on the ground in Scotland than in Ireland, and that’s not saying much.
Jenkin/Jenkins is much more common in Scotland with 774 in 1841. MacLysaght’s The Surnames of Ireland says Jenkins is an English name. So who knows?
You are correct that there are 2 Ballyscullion parishes. The bigger one is in Co Derry/Londonderry and then there is Ballyscullion East in Co Antrim. They are divided by the river Bann. The tithe applotment records for 1828 list farmers in Ireland (the tithes were a tax on land). There was a Joseph Junkin farming in Ballymacomb (Ballyscullion Co Derry) at that time:
http://www.irishgenealogyhub.com/derry/tithe-applotments/ballyscullion-parish.php
He’s also in the 1831 census, and from that we know there were 9 in his family, (plus 2 servants) and the family were Presbyterian.
http://www.census.nationalarchives.ie/pages/1831/Londonderry/Loughinshollon/Ballyscullion/Ballymacombs/50/
Joseph died in 1875 aged 82, so born c 1793:
https://civilrecords.irishgenealogy.ie/churchrecords/images/deaths_returns/deaths_1875/020638/7240862.pdf
Ringing Junkin died in 1871 aged 95, so born c 1780.
https://civilrecords.irishgenealogy.ie/churchrecords/images/deaths_retu…
I can see 3 marriages, all for female Junkins from Ballymacombs 1845 onwards. Tradition was to marry in the bride’s church. One was in Bellaghy Presbyterian church, another in Castledawson and the 3rd in Moneymore 1stPresbyterian. Bellaghy Presbyterian has no records before the 1860s (the original church was burned in the 1798 uprising and the Minister had to flee to America because of his part in the uprising. The next Minister didn’t bother keeping any records for nearly 40 years), Castledawson has baptisms for 1703 – 1706 and then nothing till 1809 & Moneymore 1st has nothing earlier than 1827. And that is broadly the general position for much of Ireland. Only a handful of churches have any records for the 1700s. And so there’s no obvious documentary way of identifying who Joseph or Ringing Junkin’s ancestors were, nor any of the other Junkins in Ireland at that time.
Regarding transferring your DNA results, my understanding is that there is a way of downloading them from Ancestry and then you can send them on to another DNA site/sites. I don’t know how to do it myself but if you contact the NIFHS their expert will tell you how it’s done. It should all be free too.